CDS

Accession Number TCMCG017C06898
gbkey CDS
Protein Id OMP05833.1
Location join(6884..6938,7099..7387,7474..7486,7566..8158,11562..11626,11942..12547,12616..12848)
GeneID InterPro:IPR000484
Organism Corchorus olitorius
locus_tag COLO4_08517

Protein

Length 617aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01013831.1
Definition Photosynthetic reaction centre, L/M [Corchorus olitorius]
Locus_tag COLO4_08517

EGGNOG-MAPPER Annotation

COG_category C
Description Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex
KEGG_TC -
KEGG_Module M00161        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko00194        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
KEGG_ko ko:K02706        [VIEW IN KEGG]
EC 1.10.3.9        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00195        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
map00195        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
GOs GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009534        [VIEW IN EMBL-EBI]
GO:0009535        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009579        [VIEW IN EMBL-EBI]
GO:0010287        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0031976        [VIEW IN EMBL-EBI]
GO:0031984        [VIEW IN EMBL-EBI]
GO:0034357        [VIEW IN EMBL-EBI]
GO:0042651        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044436        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0055035        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTCGCCATTGCCGCGACGCTTCAGTTTTTATTTGCTGCCGGCCTTAGCGGTGGTCTTGACACTTTAATTTTTTGCTCTTGCTGCGAGCCTTGCCACTTTGATTTTGCTGCGGGACTCCACAGGTTCGGCCTGTGTGTTCTTTGGTTGTTCCTTTGCCTCCACTGCAGTAGGCTTTTGCGTACATTTTCTCTCGGCTCTGTAGCATTTTTTGTTATTACCGTCGTAGCCTTACTTGGTTGTTGTTGCTGCTGCACAGACAACCTAGCTGTCACATTCTCCATTGCCGCACGTTGCTTGCTTGTTGCCATAGCTTGTAGAAGCCTCATCTTCCAGAAAGTTAGCACCTATGGCAAAGATAAAGCGTTGGATGACACTACGTCTGCACAAGGAAGTTTTCACCTTGTTAGTGAGTGTGTTGCTGGTGCGAATGATGAAGACTGGTTTCCTCTCATTGAGGAGACATCTCGGGCCCGTTTAGGAAGAGGGGATTTGACTCCGGCTACCATTCAGCATGTGTTTTTGGCTGGCTCTTTCAATATTCTTTGGGCCAAATGGGTTGATAGAGAATTTGCAAATGCTGGGTTTAGGAAACTTTTGACAAGGGCCCGTGTCTTTGATGCCATTTGCCTAGCAAGGAAAGGGCGGTTTTATGTCGATGTTGAAGTAGTGGGTTTTCTGTTGCGGAGGTGGAATAAGTCTACACACACTTTCATCGCGACTTTTGGGGAGATAACAGTTACCCTTGAGGACGTTGCTGCAACTACTCTTCACCCCATCCTTGGGGACCATGACCCGCGTTCTATTAGTTTGGATGAGGATGAGAAGGCTATCGAGGTTTTGCTTTTGGCTGCCCACAGTACTATCTCCGTGGGCAAGAAATTTAACGATGCTAAAACAACAAAACTCTTCGAGTGGCTGCAACATTATGGCAAGCCTAACAATGACATGTTCAGACGACTAGTAAAAATAGGAAAGAATAAACAAATTGAGTTCGTGGATTTACCTAAGTCAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAATTTCTTAACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTCGGTCAATCCGGCTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATATGGATGGGGGTTGCCGGCGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAATACTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCTCTGAACCTACGTGCATATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGACCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA
Protein:  
MVAIAATLQFLFAAGLSGGLDTLIFCSCCEPCHFDFAAGLHRFGLCVLWLFLCLHCSRLLRTFSLGSVAFFVITVVALLGCCCCCTDNLAVTFSIAARCLLVAIACRSLIFQKVSTYGKDKALDDTTSAQGSFHLVSECVAGANDEDWFPLIEETSRARLGRGDLTPATIQHVFLAGSFNILWAKWVDREFANAGFRKLLTRARVFDAICLARKGRFYVDVEVVGFLLRRWNKSTHTFIATFGEITVTLEDVAATTLHPILGDHDPRSISLDEDEKAIEVLLLAAHSTISVGKKFNDAKTTKLFEWLQHYGKPNNDMFRRLVKIGKNKQIEFVDLPKSGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMDGGCRRIRRCSAMRYSWCYRRNTYLKMVMAQIHSVLLTQLKPKKLIQWSPLTAFVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL